基于转录组学研究宁乡猪肌肉的生长发育
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1.湖南农业大学动物科学技术学院,湖南 长沙 410128;2.湖南省畜牧兽医研究所,湖南 长沙 410131;3.湖南省流沙河花猪生态牧业股份有限公司,湖南 宁乡 410600

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湖南省自然科学基金项目(2022JJ30317、2021JJ30386);湖南省创新平台与人才计划项目(2022NK4145)、湖南省科技重大专项(2021NK1009);湖南省科技成果转化与产业化计划项目(2022GK4016)


Study on muscle growth and development in Ningxiang pigs based on transcriptomics
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1.; 3.Hunan Liushahe Ecological Animal Husbandry Co. Ltd., Ningxiang, Hunan 410600, China

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    摘要:

    分别选取3头1、60、120、180、240、300、360日龄(分别记为ND1、ND60、ND120、ND180、ND240、ND300、ND360)宁乡猪的背最长肌进行转录组测序分析,对9个比较组所筛选到的差异表达基因(DEGs)进行富集分析,并利用实时荧光定量PCR(qRT–PCR)验证DEGs水平。结果表明:ND60 vs ND1、ND120 vs ND60、ND180 vs ND120、ND240 vs ND180、ND300 vs ND240、ND360 vs ND300、ND180 vs ND1、ND360 vs ND180和ND360 vs ND1这9个比较组中分别鉴定出1 982、245、131、311、26、84、2 257、1 377和2 654个DEGs。GO分析结果表明,DEGs主要参与肌肉收缩、骨骼肌组织发育和钙离子结合过程;KEGG通路分析结果表明,DEGs主要富集于糖异生/糖酵解、PI3K–Akt、MAPK等信号通路;对DEGs进行qRT–PCR验证,qRT–PCR结果与测序结果一致;转录组测序和试验验证结果发现,THBS3在ND180 vs ND1和ND360 vs ND1比较组中均下调,THBS4分别在ND180 vs ND1和ND360 vs ND180中显著下调和上调,这表明THBS3和THBS4的表达方式与猪生长发育规律相反,推测它们可能负向调控骨骼肌的生长发育。

    Abstract:

    At the ages of 1, 60, 120, 180, 240, 300, and 360 days(recorded as ND1, ND60, ND120, ND180, ND240, ND300, and ND360 respectively), the longissimus dorsi muscle of 3 Ningxiang pigs were respectively selected for transcriptome sequencing analysis. An enrichment analysis was performed on the differentially expressed genes(DEGs) screened from 9 comparison groups. The levels of DEGs were verified using real-time fluorescence quantitative polymerase chain reaction(qRT-PCR). The results showed that 1 982, 245, 131, 311, 26, 84, 2 257, 1 377, and 2 654 DEGs were identified in ND60 vs(short for versus) ND1, ND120 vs ND60, ND180 vs ND120, ND240 vs ND180, ND300 vs ND240, ND360 vs ND300, ND180 vs ND1, ND360 vs ND180, and ND360 vs ND1 comparison groups, respectively. Gene ontology(GO) analysis indicated that the DEGs were mainly involved in muscle contraction, skeletal muscle tissue development, and calcium ion binding processes. Kyoto encyclopedia of genes and genomes(KEGG) pathway analysis showed that the DEGs were mainly enriched in signaling pathways such as gluconeogenesis/glycolysis, PI3K-Akt, and MAPK. The qRT-PCR verification of the DEGs showed the expression trends were consistent with the sequencing results. Through transcriptome sequencing and experimental verification, we found that THBS3 was downregulated in the ND180 vs ND1 and ND360 vs ND1 comparison group, and THBS4 was significantly downregulated in ND180 vs ND1 and upregulated in ND360 vs ND180, indicating the expression patterns of THBS3 and THBS4 were opposite to the growth and development pattern of pigs. It is speculated that those may negatively regulate the growth and development of skeletal muscles.

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张维,崔清明,任慧波,陈晨,李华丽,胡雄贵,朱吉,杨仕柳,李述初,张四阳,彭英林,刘莹莹.基于转录组学研究宁乡猪肌肉的生长发育[J].湖南农业大学学报(自然科学版),2025,51(2):80-88.

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  • 在线发布日期: 2025-05-08
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