铁氧化菌菌株EEELCW01的基因组分析及砷转化功能
DOI:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(42177392)


Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    以从砷污染农田土壤中分离的1株铁氧化细菌EEELCW01为研究对象,对该菌进行全基因组分析,通过GO、KEGG、COG等数据库比对,预测该菌砷相关基因的功能;采用水培试验,验证该菌的砷转化能力。结果表明:菌株EEELCW01基因组大小为4 714 242 bp,具有2条大小分别为2 065 078 bp和2 649 164 bp的染色体,GC含量为55.99%,染色体上有4588个CDS,包含58个tRNA和12个rRNA;COG数据库注释表明该菌基因功能主要集中在氨基酸转运代谢、无机离子转运代谢等过程,GO数据库注释表明该菌主要包含膜组成部分、氧化还原过程和相关酶活性等功能,KEGG注释显示代谢相关的基因占比最高;菌株EEELCW01基因组中含有多种与砷代谢相关的基因(arsC、arsH、arsB、arsR、acr3、arrA、arxA和arsM);菌株EEELCW01将As(Ⅴ)还原为As(Ⅲ)的能力强,有氧条件下,3 d时还原率达40.1%。可见,可利用该菌株促进砷的生物还原,并联合砷超富集植物进行环境砷污染修复。

    Abstract:

    In this study, the iron-oxidizing bacterium EEELCW01, isolated from As-contaminated soils, underwent comprehensive genome analysis. The potential function of As-related genes was assessed through comparative analysis with GO, KEGG and COG databases, while the As transformation capacity of this strain was investigated via hydroponic experiments. Results unveiled that EEELCW01 possessed a genome size of 4 714 242 bp, encompassing two chromosomes sized at 2 065 078 bp and 2 649 164 bp, respectively, with a GC content of 55.99%. The chromosomes harbored 4588 CDSs, 58 tRNAs and 12 rRNAs. COG annotation emphasized gene functions centered on amino acid transport and metabolism, as well as inorganic ion transport and metabolism. GO annotation highlighted functions such as integral membrane components, oxidation-reduction processes and related enzyme activities. KEGG annotation predominantly indicated metabolism-related genes. The strain’s genome featured multiple As metabolism-related genes, including arsC, arsH, arsB, arsR, acr3, arrA, arxA and arsM. Hydroponic experiments exhibited the strain’s robust capability to reduce As(Ⅴ) to As(Ⅲ), manifesting a reduction rate of 40.1% after 3 days of incubation. In conclusion, through promoting As bioreduction and being in combination with hyperaccumulator, the EEELCW01 could be expected to conduct for the remediation of As-contaminated environments.

    参考文献
    相似文献
    引证文献
引用本文

熊潇然,邹奇,吴川,夏礼兵,潘炜松.铁氧化菌菌株EEELCW01的基因组分析及砷转化功能[J].湖南农业大学学报:自然科学版,2023,49(4):.

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2023-09-05
  • 出版日期:
文章二维码