玉米DREB转录因子家族的全基因组鉴定与分析
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国家自然科学基金项目(31901561、U2004153);河南省重点研发与推广专项(202102110010)


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    摘要:

    借助生物信息学手段,从玉米DREB家族基因的鉴定、基因结构、顺式作用元件等多角度进行解析,以期了解其在抗逆途径中的潜在功能。结果表明:玉米中共有87个DREB家族成员,分为6个亚组,理化性质分析结果表明其编码的氨基酸序列长度为125~452个氨基酸,均编码亲水性蛋白;在玉米10条染色体上均有分布,在4号、5号染色体长臂处较为集中;仅有少数基因含有内含子,大多数成员只以CDS的形式存在且在各亚组之间保守;启动子区域除含有MBS等响应干旱胁迫的元件外,还含有响应赤霉素、ABA、MeJA等相关调控途径的元件;物种共线性分析结果表明,高粱与玉米DREB家族成员之间存在共线性特征,且部分基因呈现倍性关系;基于转录组数据的表达模式分析显示,在干旱、盐、干旱和盐双重胁迫处理下,仅有几个基因的表达水平显著升高,多数DREB家族基因以下调的表达方式参与胁迫响应。

    Abstract:

    By use of bioinformatics methods, the identification, gene structure and cis acting elements of DREB family genes in maize were analyzed in order to understand their potential functions in stress resistance pathway. The results show that there were 87 DREB family members in maize, which could be divided into 6 subgroups. The length of the amino acid sequence was 125-452 amino acids, which encoded hydrophilic protein. They were distributed on 10 chromosomes of maize and concentrated at the long arm of the chromosome 4 and 5. Only a few genes contain introns, and most members exist only in the form of CDS and were conserved among subgroups. In addition to MBS and other elements in response to drought stress, the promoter region also contains elements in response to Gibberellin, ABA, MeJA and other related regulatory pathways. Species collinearity analysis showed that there was collinearity relationship among DREB family genes in sorghum and maize, and some genes showed ploidy relationship. Expression pattern analysis based on transcriptome data showed that under drought, salt and drought and salt stress, the expression levels of only a few genes were significantly increased, and the down regulated expression of most DREB family genes was involved in stress response.

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王雷立,董柯清,张严玲,刘青青,王翠玲.玉米DREB转录因子家族的全基因组鉴定与分析[J].湖南农业大学学报:自然科学版,2022,48(3):.

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  • 在线发布日期: 2022-09-14
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