基于Illumina平台转录组测序筛选牛卵泡发育调控基因
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国家自然科学基金项目(31873002);山西省回国留学人员科研项目(2014–重点5);山西省国际科技合作项目(201603D421006);山西省三晋学者和人才引进项目;山西省重点研发计划(一般)农业项目(201703D221020–1);山西省研究生优秀创新项目(2017BY068);山西农业大学创新基金项目(zdpy201403/201503)


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    摘要:

    运用超声波监测技术,采集母牛发情期出现偏差前的第一大卵泡PDF1和出现偏差后的第二大卵泡ODF2,分别分离卵泡颗粒细胞(GCs),构建RNA文库,用Illumina 2000测序;测序结果经数据库搜索和差异表达筛选,采用DAVID软件GO和KEGG pathway分析,经Genecards功能查询,筛选牛卵泡发育相关基因。结果表明:数据库搜索共获得35 325个基因,其中有意义的表达基因15 645个,从中筛选获得差异表达基因608个;GO分析表明,608个差异表达基因中参与生物过程的基因占60.46%,细胞组分的基因占20.08%,分子功能的基因占11.46%;KEGG pathway分析表明,608个差异表达基因通过9条信号通路参与牛卵泡发育调控(P<0.05),经Genecards功能筛选,共获得11个与牛卵泡发育密切相关的调控基因——SESN3、COL3A1、CCNE1、CAV1、CACNA1H、ITPR1、PIK3R3、MYC、PTGFR、CDK6、GAPDH,它们直接参与细胞增殖分化及信号通路调节。

    Abstract:

    The largest follicle at onset of predeviation(PDF1) and the second largest follicle at onset of deviation(ODF2) during bovine estrous cycle were collected by ultrasonic monitoring technology. The isolated granulosa cells(GCs) were subject to RNA library construction and Illumina 2000 sequencing. The resulted sequences were analyzed by Internet database RNA sequence search, differential expression screening, gene ontology and KEGG pathway analysis method, and genes sorting using Genecards to explore follicular development associated gene. The results showed that a total of 35 325 genes were identified after database gene search, among which were 15 645 significant expression genes with differentially expressed genes. The main functions of the 608 genes could be categorized into three groups: biological process(60.46%), cellular component(20.08%), molecular function(11.46%). KEGG pathway analysis showed that the 608 genes were involved in the regulation of bovine follicle development by 9 signal pathways(P<0.05). A total of 11 regulatory genes were obtained through genecards——SESN3, COL3A1, CCNE1, CAV1, CACNA1H, ITPR1, PIK3R3, MYC, PTGFR, CDK6 and GAPDH, which were closely related to bovine follicular development and directly involved in cell proliferation, differentiation and signal pathway regulation.

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郝庆玲,景炅婕,朱芷葳,吕丽华,李鹏飞.基于Illumina平台转录组测序筛选牛卵泡发育调控基因[J].湖南农业大学学报:自然科学版,2019,45(1):.

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  • 在线发布日期: 2019-01-26
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