水稻干尖线虫翻译控制肿瘤蛋白基因的克隆及表达分析
DOI:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(31570637);黑龙江省自然科学基金项目(ZD201404);中央高校基本科研业务专项基金项目(2572015AA09,2572015EY02,DL13BA01,2572015CA09)


Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    根据转录组测序结果,结合RT–PCR及RACE技术,从水稻干尖线虫中克隆出翻译控制肿瘤蛋白(The translationally controlled tumor protein,TCTP)基因Ab–TCTP。该基因序列全长810 bp,开放阅读框长度为546 bp,编码181个氨基酸,预测蛋白相对分子质量为20 930,等电点为4.68;Ab–TCTP蛋白属于稳定性蛋白,没有信号肽和跨膜区域,亚细胞定位于细胞核中;该蛋白功能区域的氨基酸序列较为保守,含有TCTP保守结构域,属于TCTP超家族(TCTP superfamily)。多序列比对分析结果表明,Ab–TCTP蛋白与秀丽隐杆线虫TCTP蛋白(XP_003112086.1)的覆盖度为100%,相似度为78%。系统进化树分析结果表明,该蛋白与秀丽隐杆线虫TCTP蛋白(XP_003112086.1)在同一分支上,亲缘关系较近。原位杂交试验结果显示,杂交处理后的线虫在其食道腺附近颜色加深,TCTP基因主要在水稻干尖线虫的食道腺附近表达。利用鱼藤酮对水稻干尖线虫进行药剂处理试验,24 h时LC50值为2.20 μg/mL。实时荧光定量PCR结果显示,鱼藤酮处理12 h和24 h后,TCTP基因的表达均上调,且处理24 h时的表达量大于处理12 h时的表达量。推测该基因参与了水稻干尖线虫的应激反应。

    Abstract:

    Based on transcriptome re-sequence, the translationally controlled tumor protein gene from Aphelenchoides besseyi, named Ab–TCTP, was cloned using RT–PCR and RACE. The coding sequence was 810 bp with 546 bp open reading frame (ORF), and encoded a protein with 181 amino acids. The putative protein molecular weight was 20 930 and its theoretical isoelectric point (PI) was 4.68, belonged to a stable proteins, and located in nucleus without signal peptide and transmembrane structure. The amino acid sequence of the Ab–TCTP protein in function areas tended to be conservative, contained TCTP conservative domain structure, and belonged to the TCTP superfamily. The results from multiple sequence alignment showed that the query coverage between protein Ab–TCTP and Caenorhabditis elegans TCTP (XP_001891979.1) was 100%, with a similarity of 78%. The results from phylogenetic tree analysis indicated that the Ab–TCTP protein was very close to TCTP of C. elegans. The results from in situ hybridization test indicated that the enhanced hybridization signals were mainly observed in dorsal esophageal gland of A. besseyi. The pharmaceutical experiment with rotenone showed that the value of LC50 was 2.20 μg/mL after 24 h, and the results from real-time quantitative PCR presented that the expression of Ab–TCTP was up-regulated, which the expression quantity in 24 h was larger than that in 12 h. Therefore, the Ab–TCTP gene was speculated to participate in the stress response of A. besseyi.

    参考文献
    相似文献
    引证文献
引用本文

王步勇,李丹蕾,王峰,马玲,陈俏丽,王博文.水稻干尖线虫翻译控制肿瘤蛋白基因的克隆及表达分析[J].湖南农业大学学报:自然科学版,2016,42(1):.

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2016-01-25
  • 出版日期:
文章二维码