建鲤IL–1β和IL–8基因实时荧光定量RT–PCR 检测方法的建立
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四川省科学技术厅国际合作项目(2013HH0055)


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    摘要:

    根据GenBank上的基因序列,在保守区设定并合成特异性引物,选择β–actin作为内参基因,采用SYBR Green I染料法,进行熔解曲线分析和标准曲线的制作。熔解曲线表明,β–actin、IL–1β、IL–8的基因产物均为特异性产物,其Tm值分别为86、82.5和84 ℃;标准曲线表明,各基因Ct值的检测范围为12~32,扩增效率分别为96.3%,103.2%和102.6%,具有良好的线性关系,且r2均大于0.990;组内变异系数分别为0.14%~0.86%,0.18%~0.93%和0.13%~0.86%;用建立的方法检测健康建鲤头、肾组织中IL–1β、IL–8的表达情况,相对表达量分别为1.09和1.71。综合分析,建立的建鲤IL–1β、IL–8基因实时荧光定量PCR方法具有检测范围广,扩增效率高,特异性强,重复性高的特点,可用于建鲤IL–1β、IL–8基因的表达测定。

    Abstract:

    To establish a real-time fluorescent quantitative PCR assay for detection of IL–1β and IL–8 genes of Cyprinus carpio var. Jian, specific primers were designed according to the gene sequences available in GenBank, and the β–actin gene was used as a reference gene. The standard curve and the melting curve were analyzed through SYBR Green I method. Melting curve showed specific PCR products of β–actin, IL–1β and IL–8 gene were obtained with Tm 86, 82.5 and 84 ℃, respectively. Standard curve there were good linear relationship for β–actin, IL–1β and IL–8 (r2> 0. 990) under detecting Ct range of 12 to 32. The amplification efficiency were 96.3%, 103.2%, and 102.6%, respectively, and the coefficients of variation (CV) of using this developed assay to detect these genes are 0.14%-0.86%, 0.18%-0.93% and 0.13%-0.86%, respectively. Relative expression value of IL–1β and IL–8 in healthy Cyprinus carpio var. Jian was 1.07 and 1.71, respectively. Conclusion: The developed real-time fluorescent quantitative PCR assay for IL–1β and IL–8 of Cyprinus carpio var. Jian, which showed broad range, high efficiency, specificity and reliability, could be used to detect IL–1β and IL–8 expression at mRNA level.

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曾东,肖拉,倪学勤.建鲤IL–1β和IL–8基因实时荧光定量RT–PCR 检测方法的建立[J].湖南农业大学学报:自然科学版,2014,40(6):.

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  • 最后修改日期:2014-12-01
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