柑橘Ptcor8基因相关功能的生物信息学分析
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湖南农业大学人才科学基金(09WD48);国家科技支撑计划(2008BAD92B05-2)


The Related Functional Analysis of Ptcor8 Gene By Bioinformatic
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    摘要:

    应用生物信息方法,对柑橘Ptcor8基因的理化性质、跨膜区域、疏水性/亲水性、二级结构、结构功能域、功能分类和同源性进行分析。结果表明:Ptcor8隶属于植物WCOR413冷诱导蛋白家族,具有1个621 bp的潜在编码区,编码206个氨基酸残基;功能预测结果显示,Ptcor8编码蛋白质的相对分子质量为2.28×106,等电点为9.4,具有5个疏水区,5个跨膜螺旋,6个丝氨酸磷酸化位点;亚细胞定位和分子系统发育分析结果均表明,Ptcor8为质膜型冷诱导蛋白,Ptcor8可能为冷诱导基因,在提高植物抗寒能力方面有重要的作用。

    Abstract:

    The physical and chemical properties, transmembrane region, hydrophobicity/hydrophilicity, secondary structure, functional domain, functional category and homology tree of Ptcor8 were analyzed by using bioinformatics methods .Results showed that Ptcor8 belongs to cold acclimation protein WCOR413 family and possesses a potential ORF of 621 bp sizes encoding 206 amino acid residues. Predicted by bioinformatic analysis tools such as ProParam, PSORT, MotifScan, CCD, TMHMM and NetPhos, the protein coded by Ptcor8, with molecular weight 2.28×106 and pI 9.4, possesses five hydropathicity regions, five transmembrane helix, six serine phosphorylation sites and one WCOR413 domain. Both subcell identification and molecular evolutionary investigation demonstrate that Ptcor8 protein belongs to PM type. Ptcor8 is a cold-induced gene and play an important role in imporving plant cold tolerance.

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刘湘志,龙桂友,邓子牛.柑橘Ptcor8基因相关功能的生物信息学分析[J].湖南农业大学学报:自然科学版,2011,37(2):161-165.

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  • 收稿日期:2010-12-01
  • 最后修改日期:2011-02-21
  • 录用日期:2011-02-22
  • 在线发布日期: 2011-04-12
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