The experiment of two cultivars of lily Conca D’ or and Siberia was carried out with an application of four types of fertilizer (All-organic fertilizer, all-inorganic fertilizer, organic fertilizer plus inorganic fertilizer and nutrient management referred to as treatment 1, treatment 2, treatment 3 and treatment 4 respectively), to take no fertilizer as the control. The results showed that the descending order of plant height in both two cultivars of lily were treatment 2, treatment 3, treatment 4, treatment 1, CK; the descending order of leaf number were treatment 3, treatment 1, treatment 4, treatment 2, CK; stem diameter of Conca D’ or in treatment 1 was the sturdiest, followed by treatment 3, stem diameter of Siberia in treatment 3 was the sturdiest, followed by treatment 1, and that of CK was much thinner than others. Treatment 3 could significantly improve chlorophyll content, it also increased leaf area, weight of roots and scales and extend lily roots in the underground part of lily. Meanwhile, the cut flower quality of lily was the best in treatment 3. Moreover, the treatment which contained organic fertilizer (treatment 1 and treatment 3) could significantly increased stem diameter, flower bud number and the fresh weight of leaf and stem; treatment which contained inorganic fertilizer (treatment 2 and treatment 3) could add the plant height and the length of base root of lily.